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The primary focus of this laboratory is to understand
the structure, function, and dynamics of cAMP-dependent Protein
Kinase. This enzyme serves as a prototype for the entire protein
kinase family. Functional sites and dynamic properties have
been characterized by a variety of chemical, biophysical, and
recombinant approaches. The role of phosphorylation and myristylation
as well as local and global dynamics are being probed.
A crystal structure of the C-subunit, solved
in 1991,
was the first protein kinase structure solved. This structure
provides the molecular framework for all protein kinase members.
The folding of the polypeptide chain was revealed as well
as the location of the conserved, residues throughout the
core. Open and closed conformations provide an indication
of the flexibility of the enzyme. Both ATP and the peptide
binding are clearly delineated.
A structure with AlF3
provides a model for the transition state complex. Kinetic
and fluorescent approaches are used to define individual steps
associated with substrate binding and catalysis. The structure
of the RIa and RIIb regulatory subunits have also been solved,
and these reveal critical isoform specific differences.
The dimerization domain at the N-terminus serves
also as a docking site for A Kinase Anchoring Proteins (AKAPs).
The structure of the RIa D/D domain was solved by NMR collaboration
with Dr. Patricia Jennings. The A Kinase Anchoring Proteins
(AKAPs) serve as scaffolds to bring PKA in close proximity to
its substrates. The docking of RI and RII to AKAPs has been
characterized and quantitated. The dynamics of R, C and the
AKAPs have been probed by hydrogen/deuterium (H/D) exchange
coupled with mass spectrometry. To probe
kinase function in eukaryotic cells, we microinject fluorescently
labeled proteins as well as plasmids encoding for GFP-or epitope
tagged proteins. This approach allows us to look at subcellular
localization, translocation to and from the nucleus, and to
detect elevated levels of cAMP in individual living cells. We
are now characterizing the structure and subcellular localization
of two novel AKAPs, DAKAP1 and DAKAP2, that bind to both the
RI and RII subunits. |
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