Taylor Laboratory
Leichtag Biomedical
Research Building
4th Floor, Room 412
9500 Gilman Dr.
mail Code 0654
UC San Diego
La Jolla, CA 92093
Ph: (858) 534-8190
Fax: (858) 534-8193

Research
   

The primary focus of this laboratory is to understand the structure, function, and dynamics of cAMP-dependent Protein Kinase. This enzyme serves as a prototype for the entire protein kinase family. Functional sites and dynamic properties have been characterized by a variety of chemical, biophysical, and recombinant approaches. The role of phosphorylation and myristylation as well as local and global dynamics are being probed.

A crystal structure of the C-subunit, solved in 1991, was the first protein kinase structure solved. This structure provides the molecular framework for all protein kinase members. The folding of the polypeptide chain was revealed as well as the location of the conserved, residues throughout the core. Open and closed conformations provide an indication of the flexibility of the enzyme. Both ATP and the peptide binding are clearly delineated.

A structure with AlF3 provides a model for the transition state complex. Kinetic and fluorescent approaches are used to define individual steps associated with substrate binding and catalysis. The structure of the RIa and RIIb regulatory subunits have also been solved, and these reveal critical isoform specific differences.

The dimerization domain at the N-terminus serves also as a docking site for A Kinase Anchoring Proteins (AKAPs). The structure of the RIa D/D domain was solved by NMR collaboration with Dr. Patricia Jennings. The A Kinase Anchoring Proteins (AKAPs) serve as scaffolds to bring PKA in close proximity to its substrates. The docking of RI and RII to AKAPs has been characterized and quantitated. The dynamics of R, C and the AKAPs have been probed by hydrogen/deuterium (H/D) exchange coupled with mass spectrometry. To probe kinase function in eukaryotic cells, we microinject fluorescently labeled proteins as well as plasmids encoding for GFP-or epitope tagged proteins. This approach allows us to look at subcellular localization, translocation to and from the nucleus, and to detect elevated levels of cAMP in individual living cells. We are now characterizing the structure and subcellular localization of two novel AKAPs, DAKAP1 and DAKAP2, that bind to both the RI and RII subunits.
 


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Catalytic Subunit

 


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AlF3 transition State

 

 


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D/D domain R subunit